PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10027659m
Common NameCARUB_v10027659mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 301aa    MW: 32633.6 Da    PI: 9.5429
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10027659mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.3e-19651147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde+l ++v ++G+++W+ I++ ++ gR++k+c++rw + 
  Carubv10027659m  6 KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIP-GRSGKSCRLRWCNQ 51
                     79******************************.***********985 PP

2Myb_DNA-binding56.56.6e-1860102347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++eEde +++a++q+G++ W+tIar ++ gRt++ +k++w++ 
  Carubv10027659m  60 PFSAEEDETIARAHAQFGNK-WATIARLLN-GRTDNAVKNHWNST 102
                      89******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.606156IPR017930Myb domain
SuperFamilySSF466892.88E-31399IPR009057Homeodomain-like
SMARTSM007171.6E-17554IPR001005SANT/Myb domain
PfamPF002498.6E-19651IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-25758IPR009057Homeodomain-like
CDDcd001677.16E-17850No hitNo description
SMARTSM007171.3E-1457105IPR001005SANT/Myb domain
PROSITE profilePS5129419.7758107IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2259106IPR009057Homeodomain-like
CDDcd001678.26E-1260103No hitNo description
PfamPF002496.8E-1560102IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MADRIKGPWS PEEDEQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP  60
FSAEEDETIA RAHAQFGNKW ATIARLLNGR TDNAVKNHWN STLKRKCDHR GFDGSEDHRP  120
VKRSVSAGSP PVVSGPYMSP GSPTGSDVSD SSTIPILPAV ELFKPVPRPG AVVLPLPIET  180
TSSSDGPPTS LSLSLPGSDA SEESNRSHES TNSNTSSRHN KNNTLSFLPF SGGFRGAIED  240
MGRSFPGNGG EFMAVVQEMI KAEVRSYMAE MQRKNGSGFV GGFNNTGMIP MSQIGVGRIE  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-4031084109B-MYB
1mse_C9e-4051073105C-Myb DNA-Binding Domain
1msf_C9e-4051073105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00596DAPTransfer from AT5G67300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076450.0AB007645.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8K14.
GenBankAF3268770.0AF326877.1 Arabidopsis thaliana putative myb-related protein, 33.3K (At5g67300) mRNA, complete cds.
GenBankAF3396980.0AF339698.1 Arabidopsis thaliana putative myb-related protein, 33.3K (At5g67300) mRNA, complete cds.
GenBankAY5196480.0AY519648.1 Arabidopsis thaliana MYB transcription factor (At5g67300) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279745.10.0hypothetical protein CARUB_v10027659mg
SwissprotQ9FDW10.0MYB44_ARATH; Transcription factor MYB44
TrEMBLR0GN940.0R0GN94_9BRAS; Uncharacterized protein
STRINGscaffold_803378.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-175myb domain protein r1